HeuDiConv

a heuristic-centric DICOM converter

About

heudiconv is a flexible DICOM converter for organizing brain imaging data into structured directory layouts.

• it allows flexible directory layouts and naming schemes through customizable heuristics implementations
• it only converts the necessary DICOMs, not everything in a directory
• you can keep links to DICOM files in the participant layout
• using dcm2niix under the hood, it’s fast
• it can track the provenance of the conversion from DICOM to NIfTI in W3C PROV format
• it provides assistance in converting to BIDS.
• it integrates with DataLad to place converted and original data under git/git-annex version control, while automatically annotating files with sensitive information (e.g., non-defaced anatomicals, etc)

How to cite

Please use Zenodo record for your specific version of HeuDiConv. We also support gathering all relevant citations via DueCredit.

Contents

• Installation
  • Local
  • Docker
  • Singularity
• Changes
  • Changelog
• Usage
  • CommandLine Arguments
  • Support
  • Batch jobs
• Heuristic
  • Components
• User Tutorials
• API Reference
  • BIDS
  • Conversion
  • DICOMS
  • Parsing
  • Batch Queuing
  • Utility