Tutorials

• Quickstart
  • Prepare Dataset
  • Basic Conversion
  • Output
  • Validation
  • Next
• Custom Heuristics
  • Step 1: Generate Skeleton
    • The .heudiconv hidden directory
  • Step 2: Modify Heuristic
    • Section 1
    • Section 1b
    • Section 2
  • Step 3:
    • TIPS
  • Exploring Criteria
    • Why Experiment?
      • Tuples
• Reproin
  • Get Example Dataset
  • Convert and organize
  • Output Directory Structure
    • Reproin Scanner File Names

External Tutorials

Luckily(?), we live in an era of plentiful information. Below are some links to other users’ tutorials covering their experience with heudiconv.

• YouTube tutorial by James Kent.

• Walkthrough by the Stanford Center for Reproducible Neuroscience.

• U of A Neuroimaging Core by Dianne Patterson.

• Sample Conversion: Coastal Coding 2019.

• A joined DataLad and HeuDiConv tutorial for reproducible fMRI studies.

• The ReproIn conversion workflow overview.

• Slides and recording of a ReproNim Webinar on heudiconv.

Caution

Some of these tutorials may not be up to date with the latest releases of heudiconv.